Fmoc-D-Ala(CF3)-OH
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Fmoc-D-Ala(CF3)-OH

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Category
Fluorinated Amino Acids
Catalog number
BAT-008211
CAS number
2044711-52-4
Molecular Formula
C19H16F3NO4
Molecular Weight
379.3
IUPAC Name
(2R)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-4,4,4-trifluorobutanoic acid
Synonyms
(R)-Fmoc-2-amino-4,4,4-trifluoro-butyric acid
Storage
Store at 2-8°C
InChI
InChI=1S/C19H16F3NO4/c20-19(21,22)9-16(17(24)25)23-18(26)27-10-15-13-7-3-1-5-11(13)12-6-2-4-8-14(12)15/h1-8,15-16H,9-10H2,(H,23,26)(H,24,25)/t16-/m1/s1
InChI Key
CHNDOSLXDQUFJI-MRXNPFEDSA-N
Canonical SMILES
C1=CC=C2C(=C1)C(C3=CC=CC=C32)COC(=O)NC(CC(F)(F)F)C(=O)O

Fmoc-D-Ala(CF3)-OH, a fluorinated derivative of D-alanine commonly utilized in peptide synthesis and research, boasts a plethora of applications. Here presented with an elevated degree of perplexity and burstiness are the key applications of Fmoc-D-Ala(CF3)-OH:

Peptide Synthesis: Incorporating Fmoc-D-Ala(CF3)-OH into synthetic peptides allows for an in-depth exploration of how fluorination impacts peptide structure and function. The addition of the CF3 group can significantly enhance peptide stability and bioavailability, a modification critical for the development of peptide-based therapeutics with enhanced pharmacokinetic properties.

Structural Biology: In the realm of structural biology, researchers leverage Fmoc-D-Ala(CF3)-OH to probe the conformational properties of peptides and proteins. The introduction of the CF3 group can induce pivotal conformational alterations that shed light on the intricate relationship between structure and function. Such insights play a pivotal role in the rational design of bioactive molecules and prospective drug candidates.

Chemical Biology: Within the domain of chemical biology, Fmoc-D-Ala(CF3)-OH finds application in crafting modified peptides that serve as potent probes for exploring various biological processes. Fluorinated peptides exhibit unique interactions with biological targets, providing invaluable insights into molecular interactions and enzymatic activities. This application is instrumental in unraveling the mechanistic nuances of biochemical pathways.

Pharmaceutical Development: By incorporating Fmoc-D-Ala(CF3)-OH into peptide drug candidates, researchers can potentially enhance therapeutic efficacy and mitigate degradation risks. Fluorination plays a pivotal role in bolstering metabolic stability and resistance to proteolytic enzymes, making fluorinated peptides enticing candidates for the development of pioneering pharmaceuticals.

1. The perfluorinated alcohols c-C6F11OH, c-C6F10-1,1-(OH)2 and c-C6F10-1-(CF3)OH
Jonas Schaab, Miriam Schwab, Daniel Kratzert, Jan Schwabedissen, Hans-Georg Stammler, Norbert W Mitzel, Ingo Krossing Chem Commun (Camb). 2018 Aug 16;54(67):9294-9297. doi: 10.1039/c8cc05148h.
The thermally unstable α-fluoroalcohol undecafluorocyclohexanol (c-C6F11OH) was prepared by addition of hydrogen fluoride to the corresponding ketone. c-C6F10(CF3)OH was obtained by protonation of its alkoxide [NMe4]+[C7F13O]-. Decafluorocyclohexane-1,1-diol (c-C6F10(OH)2) was prepared by acidic workup of the corresponding alkoxide [NMe4]+[C6F11O]- with sulfuric acid, which yielded (c-C6F10(OH)2) and fluorosulfonic acid. The structures of c-C6F10(CF3)OH·2H2O and of (c-C6F10(OH)2) were elucidated by single-crystal X-ray and gas-phase electron-diffraction studies.
2. Coordination Properties of Perfluoroethyl- and Perfluorophenyl-Substituted Phosphonous acids, R(f)P(OH)2
Nadine Allefeld, Boris Kurscheid, Beate Neumann, Hans-Georg Stammler, Nikolai Ignat'ev, Berthold Hoge Chemistry. 2015 Sep 21;21(39):13666-75. doi: 10.1002/chem.201501984. Epub 2015 Aug 6.
Phosphinic acids, R(f)P(O)(OH)H (R(f)=CF3, C2F5, C6F5), turned out to be excellent preligands for the coordination of phosphonous acids, R(f)P(OH)2. Addition of C2F5P(O)(OH)H to solid PtCl2 under different reaction conditions allows the isolation and full characterization of the mononuclear complexes [ClPt{P(C2F5)(OH)O}{P(C2F5)(OH)2}2] and [Pt{P(C2F5)(OH)O}2{P(C2F5)(OH)2}] containing hydrogen-bridged [R(f)P(OH)O](-) and R(f)P(OH)2 units. Further deprotonation of [Pt{P(C2F5)(OH)O}2{P(C2F5)(OH)2}2] leads to the formation of the dianionic platinate, [Pt{P(C2F5)(OH)O}4](2-), revealing four intramolecular hydrogen bridges. With PdCl2 the dinuclear complex [Pd2(μ-Cl)2{[P(C2F5)(OH)O]2H}2] was isolated and characterized. The Cl(-) free complex [Pd{P(C2F5)(OH)O}2{P(C2F5)(OH)2}2] was also prepared and deprotonated to the dianionic palladate, [Pd{P(C2F5)(OH)O}4](2-). Both compounds were characterized by NMR spectroscopy, IR spectroscopy, and X-ray analyses. In addition, the C6F5 derivatives [ClPt{P(C6F5)(OH)O}{P(C6F5)(OH)2}2] and [Pd2(μ-Cl)2{[P(C6F5)(OH)O]2H}2] as well as the CF3 derivative [Pd2(μ-Cl)2 {[P(CF3)(OH)O]2H}2] were synthesized and fully characterized. Phosphonous acid complexes are inert towards air and moisture and can be stored for several months without decomposition. The catalytic activity of the palladium complexes in the Suzuki cross-coupling reaction between 1-bromo-3-fluorobenzene and phenyl boronic acid was demonstrated.
3. Reflected shock tube and theoretical studies of high-temperature rate constants for OH+CF3H<-->CF3+H2O and CF3+OH-->products
N K Srinivasan, M-C Su, J V Michael, S J Klippenstein, L B Harding J Phys Chem A. 2007 Jul 26;111(29):6822-31. doi: 10.1021/jp0706228. Epub 2007 May 16.
The reflected shock tube technique with multipass absorption spectrometric detection of OH radicals at 308 nm, using either 36 or 60 optical passes corresponding to total path lengths of 3.25 or 5.25 m, respectively, has been used to study the bimolecular reactions, OH+CF3H-->CF3+H2O (1) and CF3+H2O-->OH+CF3H (-1), between 995 and 1663 K. During the course of the study, estimates of rate constants for CF3+OH-->products (2) could also be determined. Experiments on reaction -1 were transformed through equilibrium constants to k1, giving the Arrhenius expression k1=(9.7+/-2.1)x10(-12) exp(-4398+/-275K/T) cm3 molecule(-1) s(-1). Over the temperature range, 1318-1663 K, the results for reaction 2 were constant at k2=(1.5+/-0.4)x10(-11) cm3 molecule(-1) s(-1). Reactions 1 and -1 were also studied with variational transition state theory (VTST) employing QCISD(T) properties for the transition state. These a priori VTST predictions were in good agreement with the present experimental results but were too low at the lower temperatures of earlier experiments, suggesting that either the barrier height was overestimated by about 1.3 kcal/mol or that the effect of tunneling was greatly underestimated. The present experimental results have been combined with the most accurate earlier studies to derive an evaluation over the extended temperature range of 252-1663 K. The three parameter expression k1=2.08x10(-17) T1.5513 exp(-1848 K/T) cm3 molecule(-1) s(-1) describes the rate behavior over this temperature range. Alternatively, the expression k1,th=1.78x10(-23) T3.406 exp(-837 K/T) cm3 molecule(-1) s(-1) obtained from empirically adjusted VTST calculations over the 250-2250 K range agrees with the experimental evaluation to within a factor of 1.6. Reaction 2 was also studied with direct CASPT2 variable reaction coordinate transition state theory. The resulting predictions for the capture rate are found to be in good agreement with the mean of the experimental results and can be represented by the expression k2,th=2.42x10(-11) T-0.0650 exp(134 K/T) cm3 molecule(-1) s(-1) over the 200-2500 K temperature range. The products of this reaction are predicted to be CF2O+HF.
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